This web page shows the issues in the functions in the package qtl2 if there are any. The table below shows the list of inputs passed that are generated by fuzzers and the valgrind issues with corresponding CPP file and line number.
| name | inputs | message | file.line | valgrind_log | executable.file |
|---|---|---|---|---|---|
| qtl2:::R_bayes_int_plain | lod pos prob | 64 bytes in 1 blocks are possibly lost in loss record 32 of 1,322 | bayes_int.cpp : 51 | valgrind_log | executable-test-file |
| qtl2:::R_find_peaks | |||||
| qtl2:::R_find_peaks_and_bayesint | lod peakdrop pos prob threshold | 49 bytes in 1 blocks are possibly lost in loss record 25 of 1,323 | find_peaks.cpp : 253 | valgrind_log | executable-test-file |
| qtl2:::R_find_peaks_and_lodint | drop lod peakdrop threshold | 51 bytes in 1 blocks are possibly lost in loss record 26 of 1,321 | find_peaks.cpp : 199 | valgrind_log | executable-test-file |
| qtl2:::R_lod_int_plain | |||||
| qtl2:::Rcpp_calc_logdetXpX | |||||
| qtl2:::Rcpp_eigen_decomp | A | 8 bytes in 1 blocks are definitely lost in loss record 11 of 1,324 | lmm.cpp : 23 | valgrind_log | executable-test-file |
| qtl2:::Rcpp_eigen_rotation | K X y | Invalid read of size 8 | lmm.cpp : 55 | valgrind_log | executable-test-file |
| qtl2:::Xgenocol_to_snpcol | n_str sdp | 41 bytes in 1 blocks are possibly lost in loss record 21 of 1,321 | snpprobs.cpp : 242 | valgrind_log | executable-test-file |
| qtl2:::addlog | |||||
| qtl2:::arrange_genes | end start | 63 bytes in 1 blocks are possibly lost in loss record 32 of 1,324 | arrange_genes.cpp : 19 | valgrind_log | executable-test-file |
| qtl2:::calc_coefSE_binreg | eta_max maxit qr_tol tol X y | 53 bytes in 1 blocks are possibly lost in loss record 26 of 1,326 | matrix.cpp : 221 | valgrind_log | executable-test-file |
| qtl2:::calc_coefSE_binreg_eigenqr | eta_max maxit qr_tol tol X y | 53 bytes in 1 blocks are possibly lost in loss record 26 of 1,327 | matrix.cpp : 221 | valgrind_log | executable-test-file |
| qtl2:::calc_coefSE_binreg_weighted | eta_max maxit qr_tol tol weights X y | Conditional jump or move depends on uninitialised value(s) | binreg_weighted_eigen.cpp : 220 | valgrind_log | executable-test-file |
| qtl2:::calc_coefSE_binreg_weighted_eigenqr | eta_max maxit qr_tol tol weights X y | Conditional jump or move depends on uninitialised value(s) | binreg_weighted_eigen.cpp : 220 | valgrind_log | executable-test-file |
| qtl2:::calc_coefSE_linreg | |||||
| qtl2:::calc_coefSE_linreg_eigenchol | |||||
| qtl2:::calc_coefSE_linreg_eigenqr | |||||
| qtl2:::calc_coef_binreg | eta_max maxit qr_tol tol X y | 53 bytes in 1 blocks are possibly lost in loss record 26 of 1,327 | matrix.cpp : 221 | valgrind_log | executable-test-file |
| qtl2:::calc_coef_binreg_eigenqr | eta_max maxit qr_tol tol X y | 53 bytes in 1 blocks are possibly lost in loss record 26 of 1,326 | matrix.cpp : 221 | valgrind_log | executable-test-file |
| qtl2:::calc_coef_binreg_weighted | eta_max maxit qr_tol tol weights X y | Invalid read of size 8 | binreg_weighted_eigen.cpp : 219 | valgrind_log | executable-test-file |
| qtl2:::calc_coef_binreg_weighted_eigenqr | eta_max maxit qr_tol tol weights X y | Invalid read of size 8 | binreg_weighted_eigen.cpp : 219 | valgrind_log | executable-test-file |
| qtl2:::calc_coef_linreg | |||||
| qtl2:::calc_coef_linreg_eigenchol | |||||
| qtl2:::calc_coef_linreg_eigenqr | |||||
| qtl2:::calc_fitted_linreg_eigenchol | |||||
| qtl2:::calc_fitted_linreg_eigenqr | |||||
| qtl2::calc_kinship | prob_array | 81 bytes in 1 blocks are possibly lost in loss record 41 of 1,322 | calc_kinship.cpp : 12 | valgrind_log | executable-test-file |
| qtl2:::calc_ll_binreg | eta_max maxit qr_tol tol X y | 53 bytes in 1 blocks are possibly lost in loss record 26 of 1,326 | matrix.cpp : 221 | valgrind_log | executable-test-file |
| qtl2:::calc_ll_binreg_eigenchol | eta_max maxit tol X y | 53 bytes in 1 blocks are possibly lost in loss record 26 of 1,326 | matrix.cpp : 221 | valgrind_log | executable-test-file |
| qtl2:::calc_ll_binreg_eigenqr | eta_max maxit qr_tol tol X y | 53 bytes in 1 blocks are possibly lost in loss record 26 of 1,326 | matrix.cpp : 221 | valgrind_log | executable-test-file |
| qtl2:::calc_ll_binreg_weighted | eta_max maxit qr_tol tol weights X y | Invalid read of size 8 | binreg_weighted_eigen.cpp : 107 | valgrind_log | executable-test-file |
| qtl2:::calc_ll_binreg_weighted_eigenchol | eta_max maxit tol weights X y | Conditional jump or move depends on uninitialised value(s) | binreg_weighted_eigen.cpp : 37 | valgrind_log | executable-test-file |
| qtl2:::calc_ll_binreg_weighted_eigenqr | eta_max maxit qr_tol tol weights X y | Invalid read of size 8 | binreg_weighted_eigen.cpp : 107 | valgrind_log | executable-test-file |
| qtl2:::calc_mvrss_eigenchol | X Y | Invalid read of size 16 | linreg_eigen.cpp : 443 | valgrind_log | executable-test-file |
| qtl2:::calc_mvrss_eigenqr | tol X Y | Invalid read of size 16 | linreg_eigen.cpp : 490 | valgrind_log | executable-test-file |
| qtl2:::calc_resid_eigenchol | X Y | Invalid read of size 16 | linreg_eigen.cpp : 528 | valgrind_log | executable-test-file |
| qtl2:::calc_resid_eigenqr | tol X Y | Invalid read of size 8 | linreg_eigen.cpp : 576 | valgrind_log | executable-test-file |
| qtl2:::calc_resid_linreg | tol X Y | Invalid read of size 16 | linreg_eigen.cpp : 576 | valgrind_log | executable-test-file |
| qtl2:::calc_resid_linreg_3d | P tol X | 72 bytes in 1 blocks are possibly lost in loss record 35 of 1,322 | linreg.cpp : 52 | valgrind_log | executable-test-file |
| qtl2:::calc_rss_eigenchol | |||||
| qtl2:::calc_rss_eigenqr | |||||
| qtl2:::calc_rss_linreg | tol X Y | Invalid read of size 16 | linreg_eigen.cpp : 490 | valgrind_log | executable-test-file |
| qtl2::clean_genoprob | column_threshold prob_array value_threshold | 87 bytes in 1 blocks are possibly lost in loss record 41 of 1,322 | clean_genoprob.cpp : 16 | valgrind_log | executable-test-file |
| qtl2:::expand_genoprobs_intcovar | intcovar probs | 76 bytes in 1 blocks are possibly lost in loss record 35 of 1,323 | matrix.cpp : 174 | valgrind_log | executable-test-file |
| qtl2::find_ibd_segments | error_prob g1 g2 p | 49 bytes in 1 blocks are possibly lost in loss record 25 of 1,322 | find_ibd_segments.cpp : 36 | valgrind_log | executable-test-file |
| qtl2:::find_intervals | |||||
| qtl2:::find_lin_indep_cols | |||||
| qtl2:::find_matching_cols | |||||
| qtl2:::genocol_to_snpcol | n_str sdp | 41 bytes in 1 blocks are possibly lost in loss record 21 of 1,321 | snpprobs.cpp : 136 | valgrind_log | executable-test-file |
| qtl2:::get_permutation | |||||
| qtl2:::interp_genoprob_onechr | genoprob map pos_index | 79 bytes in 1 blocks are possibly lost in loss record 35 of 1,324 | interp_genoprob.cpp : 14 | valgrind_log | executable-test-file |
| qtl2:::interpolate_map | newmap oldmap oldpos | 57 bytes in 1 blocks are possibly lost in loss record 31 of 1,323 | interpolate_maps.cpp : 33 | valgrind_log | executable-test-file |
| qtl2:::invert_founder_index | cross_info | Invalid write of size 4 | cross_util.cpp : 176 | valgrind_log | executable-test-file |
| qtl2::invert_sdp | n_str sdp | 41 bytes in 1 blocks are possibly lost in loss record 21 of 1,322 | snpprobs.cpp : 47 | valgrind_log | executable-test-file |
| qtl2:::matrix_x_3darray | A X | 72 bytes in 1 blocks are possibly lost in loss record 35 of 1,322 | matrix.cpp : 293 | valgrind_log | executable-test-file |
| qtl2:::matrix_x_matrix | X Y | 43 bytes in 1 blocks are possibly lost in loss record 21 of 1,324 | matrix.cpp : 266 | valgrind_log | executable-test-file |
| qtl2:::matrix_x_vector | X y | 45 bytes in 1 blocks are possibly lost in loss record 23 of 1,324 | matrix.cpp : 281 | valgrind_log | executable-test-file |
| qtl2::maxmarg | minprob prob_array tol | 81 bytes in 1 blocks are possibly lost in loss record 41 of 1,321 | maxmarg.cpp : 18 | valgrind_log | executable-test-file |
| qtl2:::permute_ivector | |||||
| qtl2:::permute_ivector_stratified | |||||
| qtl2:::permute_nvector | |||||
| qtl2:::permute_nvector_stratified | |||||
| qtl2:::random_int | |||||
| qtl2::reduce_markers | min_dist pos weights | 55 bytes in 1 blocks are possibly lost in loss record 26 of 1,323 | reduce_markers.cpp : 24 | valgrind_log | executable-test-file |
| qtl2:::scan_binary_onechr | addcovar eta_max genoprobs maxit pheno qr_tol tol | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,323 | scan1_binary.cpp : 34 | valgrind_log | executable-test-file |
| qtl2:::scan_binary_onechr_intcovar_highmem | addcovar genoprobs intcovar maxit pheno qr_tol tol | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,322 | scan1_binary.cpp : 150 | valgrind_log | executable-test-file |
| qtl2:::scan_binary_onechr_intcovar_lowmem | addcovar eta_max genoprobs intcovar maxit pheno qr_tol tol | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1_binary.cpp : 238 | valgrind_log | executable-test-file |
| qtl2:::scan_binary_onechr_intcovar_weighted_highmem | addcovar genoprobs intcovar maxit pheno qr_tol tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,325 | scan1_binary.cpp : 193 | valgrind_log | executable-test-file |
| qtl2:::scan_binary_onechr_intcovar_weighted_lowmem | addcovar eta_max genoprobs intcovar maxit pheno qr_tol tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1_binary.cpp : 295 | valgrind_log | executable-test-file |
| qtl2:::scan_binary_onechr_weighted | addcovar eta_max genoprobs maxit pheno qr_tol tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,323 | scan1_binary.cpp : 90 | valgrind_log | executable-test-file |
| qtl2:::scan_hk_onechr | addcovar genoprobs pheno tol | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1_hk.cpp : 68 | valgrind_log | executable-test-file |
| qtl2:::scan_hk_onechr_intcovar_highmem | addcovar genoprobs intcovar pheno tol | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1_hk.cpp : 146 | valgrind_log | executable-test-file |
| qtl2:::scan_hk_onechr_intcovar_lowmem | addcovar genoprobs intcovar pheno tol | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1_hk.cpp : 242 | valgrind_log | executable-test-file |
| qtl2:::scan_hk_onechr_intcovar_weighted_highmem | addcovar genoprobs intcovar pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,325 | scan1_hk.cpp : 191 | valgrind_log | executable-test-file |
| qtl2:::scan_hk_onechr_intcovar_weighted_lowmem | addcovar genoprobs intcovar pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1_hk.cpp : 294 | valgrind_log | executable-test-file |
| qtl2:::scan_hk_onechr_nocovar | genoprobs pheno tol | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,321 | scan1_hk.cpp : 26 | valgrind_log | executable-test-file |
| qtl2:::scan_hk_onechr_weighted | addcovar genoprobs pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,325 | scan1_hk.cpp : 100 | valgrind_log | executable-test-file |
| qtl2:::scan_pg_onechr | addcovar eigenvec genoprobs pheno tol weights | 41 bytes in 1 blocks are possibly lost in loss record 21 of 1,322 | scan1_pg.cpp : 33 | valgrind_log | executable-test-file |
| qtl2:::scan_pg_onechr_intcovar_highmem | addcovar eigenvec genoprobs intcovar pheno tol weights | 41 bytes in 1 blocks are possibly lost in loss record 21 of 1,327 | scan1_pg.cpp : 104 | valgrind_log | executable-test-file |
| qtl2:::scan_pg_onechr_intcovar_lowmem | addcovar eigenvec genoprobs intcovar pheno tol weights | 41 bytes in 1 blocks are possibly lost in loss record 21 of 1,324 | scan1_pg.cpp : 180 | valgrind_log | executable-test-file |
| qtl2:::scancoefSE_binary_addcovar | addcovar eta_max genoprobs maxit pheno qr_tol tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1coef_binary.cpp : 160 | valgrind_log | executable-test-file |
| qtl2:::scancoefSE_binary_intcovar | addcovar eta_max genoprobs intcovar maxit pheno qr_tol tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1coef_binary.cpp : 233 | valgrind_log | executable-test-file |
| qtl2:::scancoefSE_hk_addcovar | addcovar genoprobs pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1coef_hk.cpp : 149 | valgrind_log | executable-test-file |
| qtl2:::scancoefSE_hk_intcovar | addcovar genoprobs intcovar pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1coef_hk.cpp : 218 | valgrind_log | executable-test-file |
| qtl2:::scancoefSE_pg_addcovar | addcovar eigenvec genoprobs pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1coef_pg.cpp : 174 | valgrind_log | executable-test-file |
| qtl2:::scancoefSE_pg_intcovar | addcovar eigenvec genoprobs intcovar pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,325 | scan1coef_pg.cpp : 256 | valgrind_log | executable-test-file |
| qtl2:::scancoef_binary_addcovar | addcovar eta_max genoprobs maxit pheno qr_tol tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,325 | scan1coef_binary.cpp : 34 | valgrind_log | executable-test-file |
| qtl2:::scancoef_binary_intcovar | addcovar eta_max genoprobs intcovar maxit pheno qr_tol tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,326 | scan1coef_binary.cpp : 100 | valgrind_log | executable-test-file |
| qtl2:::scancoef_hk_addcovar | addcovar genoprobs pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,324 | scan1coef_hk.cpp : 31 | valgrind_log | executable-test-file |
| qtl2:::scancoef_hk_intcovar | addcovar genoprobs intcovar pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,325 | scan1coef_hk.cpp : 94 | valgrind_log | executable-test-file |
| qtl2:::scancoef_pg_addcovar | addcovar eigenvec genoprobs pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,325 | scan1coef_pg.cpp : 32 | valgrind_log | executable-test-file |
| qtl2:::scancoef_pg_intcovar | addcovar eigenvec genoprobs intcovar pheno tol weights | 80 bytes in 1 blocks are possibly lost in loss record 41 of 1,326 | scan1coef_pg.cpp : 108 | valgrind_log | executable-test-file |
| qtl2:::subtractlog | |||||
| qtl2:::weighted_3darray | array weights | 76 bytes in 1 blocks are possibly lost in loss record 35 of 1,322 | matrix.cpp : 238 | valgrind_log | executable-test-file |
| qtl2:::weighted_matrix | mat weights | 53 bytes in 1 blocks are possibly lost in loss record 26 of 1,322 | matrix.cpp : 221 | valgrind_log | executable-test-file |